PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033255.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 93aa    MW: 10351.7 Da    PI: 8.5215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033255.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-0826602054
                  HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   ++Lr+llP+ + + +s K+s + +L++++ YI+sL
  EcC033255.10 26 VSKLRQLLPEiR-SSRSDKVSASKVLQETCSYIRSL 60
                  589*******77.89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.47660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-72275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-82478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-52660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSSSTQ SGTPSRITDD QMIELVSKLR QLLPEIRSSR SDKVSASKVL QETCSYIRSL  60
HREVADLSER LSQLLSTVDA DSAEAAIIRS LIM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032347.11e-58PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX12e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A059AED31e-58A0A059AED3_EUCGR; Uncharacterized protein
STRINGPGSC0003DMT4000177484e-42(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-41bHLH family protein